Large rounding differences on VAT receipts usually occur due to the computational difference of VAT during that particular month. To find the discrepancy, you should first navigate to the VAT calculation for that month and open the link "Show receipts to be checked (n pcs)" from the box at the very beginning of the calculation.
Receipts with larger computational differences in VAT should not appear in this listing. Differences of a few cents in the listing are due to system calculations and are common, as is the appearance of the VAT receipt for that month on the list. However, if larger discrepancies appear in the listing, these receipts should be checked and corrected. Here is our guide: Creating a VAT calculation
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